YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9878, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTESENVFR QSFRNWNDRS NRTTTSSTSN RPVLSEWTDY FKTGANDLYN RLPSSVQDIG  60
   61 ATNNNVQEPS WYNLSRLERL IGFGCCLGAS VLCFVLCFFM LPVLALRPRK FGLLWTGGSV 120
  121 LFVVSFGVLQ EPYNYVRHLL SRDRILFTGV FFSSVFLTIY SACILKSSIL TIFTSIIEIL 180
  181 AVLYYTLSYF PFGATTLTFF TSYVVGYVGG LIGGVIF

Type	Start	End	Confidence
Cytoplasmic	1	79	0.70
Transmembrane Helix	80	104	0.91
Non-Cytoplasmic	105	110	0.62
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	144	0.57
Transmembrane Helix	145	164	0.89
Non-Cytoplasmic	165	168	0.41
Transmembrane Helix	169	188	0.66
Cytoplasmic	189	191	0.29
Transmembrane Helix	192	216	0.80
Non-Cytoplasmic	217	217	0.44