YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BIG1_CANAL
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFVLLAYI IPFILCQLTP VLVASHKLVR GLKEEINPSN TLPHNVTSVT NMLKKLITEC  60
   61 SSDAYLLINQ PGLTYADLTT EKKDNWPFLR NYLYMSSTIV GLPRVENPID LDFLEQYIIS 120
  121 NCDAETINVW HDSEDEVVDY YDIRKRVIRI DLSPLSISNH DDRVKEIFEH DQLIRKILRK 180
  181 LPSAHYTIIL TSLEPGIIHP VPRFLMEETP ASFEIFDDII NDPFHNREIE KNDRFHKVEP 240
  241 NWNPIRDSND RYYRNKKKDE IHLFDYELWE KNEKLITTIF VMVLSLFMMK IISFFNYLKQ 300
  301 KIIQKKQQKS KRGIIADDKK LD

Type	Start	End	Confidence
Signal Peptide	1	24	0.88
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	275	0.96
Transmembrane Helix	276	298	0.74
Cytoplasmic	299	322	0.78