YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4426
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFSSLAGF FNRNKRKIFI TSAVTVSIYL LINEFVIKKF RNYQNALRQE LLFKQQIKQR  60
   61 FIQTQQDCYY TILALLPVLA APIIDSLPVE LITQALRLKK NNSSQQVTSG SNSELTADNL 120
  121 NLLDNNNNPE SKLSIYMSKS KTELWNLLKI KTITRTLTLL YTVSGLFLIT RLQLNILARR 180
  181 SYLESAIQMA GVKSTNNDID PHENYIIEQS YLSLSWWLLN KGWSNLSSII EALVVKKFEK 240
  241 ITPKTELSIN EFEFDLIEII NEINSNNKEY ILANLFPINY SDLLETILNT NSDLIHHLDS 300
  301 PESNLIKLIN ETNAIMLDNN LYFFDLLNAL IMNTVSTLTA NLSFSLGANN SLNNSLLMAS 360
  361 SGNLAAHGEN PKVVDITHND QSFKLASFLA QLSVQNNIMI DNDNLKTEDI SPKHESDLEE 420
  421 ILNSLNGGTN ELPTESYGNV YINNLNQLEE LDDFSAGIYS NFE

Type	Start	End	Confidence
Cytoplasmic	1	17	0.68
Transmembrane Helix	18	37	0.68
Non-Cytoplasmic	38	463	0.82