YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46435324, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSSATGFS KHQESAIVSD SEGDAIDSEL HMSANPPLLR RSSSLFSLSS KDDLPKPDSK  60
   61 EYLKFIDDNR HFSMIRNLHM ADFITLLNGF SGFYSIISCL RYTLTGQTHY VQRAHFFILL 120
  121 GLFFDFFDGR VARLRNKSSL MGQELDSLAD LVSFGVSPAT IAFAIGFRTT VDVLFLAFWV 180
  181 LCGLTRLARF NISVNNIPKD KHGKSQYFEG LPIPTNLFWV GFMALLVYKD WIHDNLPFGI 240
  241 VFQDTSFEFH LVTIGFVLQG CAEISKSLKI PKP

Type	Start	End	Confidence
Cytoplasmic	1	82	0.97
Transmembrane Helix	83	104	0.88
Non-Cytoplasmic	105	110	0.86
Transmembrane Helix	111	129	0.89
Cytoplasmic	130	146	0.85
Transmembrane Helix	147	167	0.89
Non-Cytoplasmic	168	172	0.77
Transmembrane Helix	173	190	0.90
Cytoplasmic	191	209	0.80
Transmembrane Helix	210	228	0.89
Non-Cytoplasmic	229	246	0.77
Transmembrane Helix	247	265	0.72
Cytoplasmic	266	273	0.72