YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8269, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEIQAHTN EVSQGGGKTA FKDYLGKFAD VEDPLERRRL ALEEIDKAGF GWTQVKMILI  60
   61 AGVGFMTDSY DIFAINLSMN MLQYVYWNGT IPDSTTTLIK VSTSVGTVIG QISFGSIADK 120
  121 VGRKKIYGLE LIIMIFATLF QCTLGTSPAI NFVAIFSTIR ILMGIGIGGD YPLSSIISSE 180
  181 FSTTKWRGAI MAAVFSNQGL GQVFAGIVAM ICVAGYKDDL IIANKGSECV GRCRKAADQM 240
  241 WRIIVGFGC

Type	Start	End	Confidence
Cytoplasmic	1	56	0.93
Transmembrane Helix	57	75	0.77
Non-Cytoplasmic	76	95	0.77
Transmembrane Helix	96	117	0.78
Cytoplasmic	118	125	0.88
Transmembrane Helix	126	150	0.79
Non-Cytoplasmic	151	151	0.54
Transmembrane Helix	152	174	0.65
Cytoplasmic	175	193	0.51
Transmembrane Helix	194	214	0.74
Non-Cytoplasmic	215	249	0.55