YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3668, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	49	0.86
Non-Cytoplasmic	50	69	0.87
Transmembrane Helix	70	92	0.89
Cytoplasmic	93	99	0.81
Transmembrane Helix	100	118	0.94
Non-Cytoplasmic	119	124	0.89
Transmembrane Helix	125	148	0.91
Cytoplasmic	149	157	0.89
Transmembrane Helix	158	180	0.89
Non-Cytoplasmic	181	191	0.76
Transmembrane Helix	192	211	0.96
Cytoplasmic	212	282	0.96
Transmembrane Helix	283	304	0.78
Non-Cytoplasmic	305	315	0.75
Transmembrane Helix	316	337	0.87
Cytoplasmic	338	344	0.90
Transmembrane Helix	345	365	0.94
Non-Cytoplasmic	366	394	0.90
Transmembrane Helix	395	417	0.91
Cytoplasmic	418	429	0.86
Transmembrane Helix	430	450	0.85
Non-Cytoplasmic	451	459	0.75
Transmembrane Helix	460	478	0.96
Cytoplasmic	479	545	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKIERIFS GPALKINAYL DKLPKIYNVF FIASISTIAG MMFGFDISSM SAFIGSGPYM  60
   61 KFFHSPGSDI QGFITASMAL GSFFGSIASS FVSEPFGRRL SLLICAFFWM VGAAIQSSSQ 120
  121 NRAQLIIGRI ISGVGVGFGS AVAPIYGAEL APRKIRGFIG GMFQFFVTLG ILIMFYISFG 180
  181 LGHINGVASF RIAWGLQIVP GLCLFLGCFF IPESPRWLAK QGQWEAAEEI VAKVQAHGDR 240
  241 ENPDVLIEIS EIKDQLLLEQ SSKHIGYATL FTKKYIYRTF TAIFAQIWQQ LTGMNVMMYY 300
  301 IVYIFQMAGY SGNSNLVASS IQYVINTCVT APALYFIDKI GRRPLLIGGA TMMMAFQFGL 360
  361 AGILGNYSVP WPDSGNDSVN IRIPLDNKSA SKGAIACCYL FVASFAFTWG VGIWVYCAEI 420
  421 WGDNRVAQRG NAISTSANWI LNFAIAMYTP SGFKNISWKT YIIYGVFCLA MGTHVYFGFP 480
  481 ETKGKRLEEI GQMWEENVPA WRSRSWQPTI PIASDAELAR KMEVEHQEDK LMNDDSNSES 540
  541 KENQV