YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46435269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	396	0.61
Transmembrane Helix	397	418	0.86
Cytoplasmic	419	425	0.55
Transmembrane Helix	426	458	0.70
Non-Cytoplasmic	459	478	0.54
Transmembrane Helix	479	501	0.86
Cytoplasmic	502	511	0.43
Transmembrane Helix	512	535	0.67
Non-Cytoplasmic	536	536	0.37
Transmembrane Helix	537	556	0.76
Cytoplasmic	557	564	0.83
Transmembrane Helix	565	587	0.92
Non-Cytoplasmic	588	607	0.90
Transmembrane Helix	608	630	0.95
Cytoplasmic	631	650	0.91
Transmembrane Helix	651	670	0.95
Non-Cytoplasmic	671	675	0.73
Transmembrane Helix	676	698	0.87
Cytoplasmic	699	706	0.79
Transmembrane Helix	707	729	0.84
Non-Cytoplasmic	730	744	0.77
Transmembrane Helix	745	773	0.83
Cytoplasmic	774	789	0.84
Transmembrane Helix	790	810	0.90
Non-Cytoplasmic	811	830	0.84
Transmembrane Helix	831	853	0.87
Cytoplasmic	854	860	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLQFN AVPEWSSKYI AYTTLKKLIY SLQRDNLRRT YQQDDEEATL EGSHLIGANY  60
   61 ASTGQTQDES ASAVFIAALD AELKKIDTFY QQQEGFIFSN MNDLMNDIDN FEREVDESLA 120
  121 LPGSNKNFQG VVKQNRRVSG SSQDNYITNT TDPDTEFTQP EDDDDDDDEE DALTSAFQET 180
  181 RGRRRGGSVP ELHENEHQLR HTRSIDDYAT KSPKIWNDLN NATLSNNVPP QLLLLSENRI 240
  241 ILRKRVIGLY TTLSELKSFI ELNYTGFKKA LKKFDKSLNT NIKDNYLENL PNNSYIFKKS 300
  301 TMKKVDEHLD SLVKLYALIC NHGDDLEAAK QELSIHLREH VVWERNTVWR DMIGLERKSY 360
  361 AANSKLMNRS DGNNDEKEDG SGNMKLMSKF NISLKNPVVI KLILIFAVTV FLLNVSPFDD 420
  421 SAQRNCFALL ICASLLWATE AIPLFVTSLV IPLLIVVLNV VKNDDGSIME TVDASKFILS 480
  481 TMWNSVILLL LGGFTLAAAL SKYHIAKLIS TWILSKAGTN PAVVLLTIMG VALFASMWIS 540
  541 NVAAPVLCFS LIQPLIRTLP KGSRFINALI MGIALASNVG GMASPIASPQ NMIAIGAMEP 600
  601 QPSWGEWFVV ALPVCVLALL LIWVFLLITF NCNSRNTHLV AIRTIDDKFT GIQWYIITVS 660
  661 FGTILLWCLA SRLTGIFGEM GIIALIPVIL FFGSGLLTTE DFNNYPWNIV ILAMGGTALG 720
  721 KAVASSGLLN TIAVTIQSQV EGFSLFGIIL TIGIFVLTIA TFISHTVSAL ILIPLVSELG 780
  781 HNMPDPHPRM LILSTALLCS AAMGLPTSGF PNVTAICMTD EFGKPYLTVG TFIKIGVPAS 840
  841 VIAYVIIVTV GHATMKIINF