YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI18_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWKLLRLFI IIKLIQLAII YFSPCQFDTS SELIIQNLSS TSSSKSYYNV IITTILNKLI  60
   61 VWDSVYFNDL FINPIQFEHQ FVFCPGWIQL IKLLNIKNYY TAQLTSILIS NLCHFASVIT 120
  121 LYYLTNEMDM KFGLVSGLLM IISPAGVFLT GNYSENLSNL LTLLMFLTYY KSINFNDVKQ 180
  181 PSNKSITNIL GYIISGIFCA INFTVRANGL LLGVIYVFDL YHFIQNKSSS QIILSIITGS 240
  241 ILFMTFLMTN IYHYIKFCPG REWCNNTFPS LFQFAQHHYW NVGFLKYWTP NNIPNFILVL 300
  301 PVLIFNIYSL GYMYQELPKN RKLLPLIVIN GLIVVGGTFF WNIQILNRIT SFSPLIYWTL 360
  361 AYNLKKPWAK YAIGYCIVWN FVQTGLFAAF LPPA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.76
Transmembrane Helix	9	27	0.73
Non-Cytoplasmic	28	101	0.71
Transmembrane Helix	102	124	0.86
Cytoplasmic	125	131	0.65
Transmembrane Helix	132	151	0.91
Non-Cytoplasmic	152	188	0.50
Transmembrane Helix	189	218	0.72
Cytoplasmic	219	231	0.43
Transmembrane Helix	232	253	0.91
Non-Cytoplasmic	254	292	0.59
Transmembrane Helix	293	314	0.87
Cytoplasmic	315	322	0.77
Transmembrane Helix	323	345	0.88
Non-Cytoplasmic	346	370	0.58
Transmembrane Helix	371	391	0.83
Cytoplasmic	392	394	0.47