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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.8405, orf1...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKPYSFV GRDSFDDLDS SLDKALHSAS NNYFHSSNNK SNGPRSNSQS SVNAIPLETF  60
   61 RSSNNFDEHS DSVPLISDSN IYSRLQNRSI SSSSTSLNIA ARSFSSKFKK FVRSSVDFFK 120
  121 NAKRELEQER IRLSGSSDYR NTDHSNMADE RYISAKTTNL KANNIYPSNS ISNAKYNPIT 180
  181 FIPIILYEQF KFFFNLYFLM VALSQIVPQL RIGYLSSYIV PLAFVLTVTM MKEAGDDIAR 240
  241 RRRDKEQNQE LYEVLNRNSS DALSIESKLV PASGLRVGDL VRLHKDVRIP ADMILLQSSE 300
  301 STGEVFIKTD QLDGETDWKL RIACAATQAS QNTKQIVDSV SVIVGNPSKS IHHFNGQLIY 360
  361 KSPSTTGSAS PISNNETYAL SIDQTLWANT VLASGTAVGM VIYTGIETRQ SMNTTKTGVK 420
  421 TGLLELEING LSKILCAVVF ILSLVLVLAH GFPLKAAWYL DIMRFLILFS SIIPVSLRVN 480
  481 LDLAKSVYAS QIQNDSSIAG TIVRTSTIPE DLGRIEYLLS DKTGTLTQND MELKKLHLGT 540
  541 VSYAGDAMDI VTDYVKVLLK HLDSGQKKKD LSSRVCELVL TLALCHNVTP TYDDDEDVGF 600
  601 GEVTYQAASP DEIAIVKFCE SVGLKLYKRD RHSITLLHVY TNKFLEFEIL YNFPFSSETK 660
  661 RMGIIVKDKN REDIWFMQKG ADTVMSSIVS SNDWLDEETG NMAREGLRTL VIGKKKLGSK 720
  721 LFEDFVDNYK QASLSMHDRD SDMQKVVSYY LEQDLELLGL TGVEDRLQRD VKTSIELLRN 780
  781 AGIKIWMLTG DKVETAKCVS ISARLISRGQ YVHQITKLSH PDMAMNQLEY LRINTNACLL 840
  841 IDGESLGTYM KHFSDEFFKV VINLPAVIAC RCSPQQKADV AVMIRKITGK RVCCIGDGGN 900
  901 DVSMIQCADV GVGIVGKEGK QASLAADFSI DQFCYLSKLL LWHGRNSYKR SAKLGQFVIH 960
  961 RGLLISVAQA VYSISSKFEP LALYQGWLMV GYSTIYTMAP VFSLTLDCDI DEHLTKLYPE1020
 1021 LYKELTLGKS LSYKTFFMWV FISLYQGCMI QLLSQRFQTL LDKRFTAMVA LSFSCLIYNE1080
 1081 LIMVAISINK WNKIMASTII LTFLAYIGSI PFLSEYFNLT YVSSFSYI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle