YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8403, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.97
Transmembrane Helix	12	35	0.91
Cytoplasmic	36	53	0.93
Transmembrane Helix	54	74	0.90
Non-Cytoplasmic	75	87	0.86
Transmembrane Helix	88	108	0.92
Cytoplasmic	109	131	0.91
Transmembrane Helix	132	154	0.87
Non-Cytoplasmic	155	164	0.77
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	194	0.80
Transmembrane Helix	195	216	0.91
Non-Cytoplasmic	217	253	0.96
Transmembrane Helix	254	276	0.87
Cytoplasmic	277	291	0.91
Transmembrane Helix	292	315	0.92
Non-Cytoplasmic	316	349	0.84
Transmembrane Helix	350	377	0.73
Cytoplasmic	378	396	0.86
Transmembrane Helix	397	419	0.92
Non-Cytoplasmic	420	426	0.74
Transmembrane Helix	427	448	0.93
Cytoplasmic	449	455	0.77
Transmembrane Helix	456	475	0.95
Non-Cytoplasmic	476	493	0.87
Transmembrane Helix	494	516	0.91
Cytoplasmic	517	586	0.94
Transmembrane Helix	587	609	0.90
Non-Cytoplasmic	610	619	0.85
Transmembrane Helix	620	642	0.89
Cytoplasmic	643	725	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSYVPLPQ SAGYAVVVGL GFVFAFGMML TTYILRRYNK EVMTAEEFAT AGRSVKTGLI  60
   61 AACIVSSWTW SATLNGSTSQ VYNNGVCGSI FYAMGATVQI TLFACLAIKA RERAPAAHTY 120
  121 LEIVKGRYGT TTHFVYIFWG IVTNILVTSM LLSGGSATVN DLTGMNIVAA ILLLPLGVVI 180
  181 YTLFGGIKAT FLTDYAHTVV LIVIIFIFAF TTWATSSKLG SPQAVWEIVT KLAESNPREG 240
  241 NAGGSYFTMH SRSGGMFFVI NIIGNFGTVF LDNGYFNKAF AANPSSTYKG YIFGSLAWCA 300
  301 IPALCSLTMG FAALALEHTE YWPLGRPMTA AEVASGLVLP NAASALLGKA GAVLALLMVF 360
  361 MAVTSAMSAE LIAVSTIATY DIYRTYINPN ASGKKLIWVS HLSTVIFAYT MAGFAIGLYY 420
  421 AKVSMGYLYE MMGVIIGGAV LSSALTILSK RQNWHAATFT PIISTALAIM AWLVCTKKKF 480
  481 GSVTYLKTFE DDAMLTGNCV ALLTPFIIVP ILTFIFKPQN FDWKLLDQRI TRVDEEEELA 540
  541 EALGGTVSSD PERLHPIKSQ ISVIASQLVE GEREQYQKEK EILNKSFKIC CIVCCTLAIC 600
  601 LVVLFPMPLY GTKYIFSKKF FTGWVVVFII WLFYSAFQVI IFPIWESRTD LYHTFRGIYW 660
  661 DLTGQTYKLK AWQNEHPEEM HAVRSQLQAQ LSRTAVTHEI VDGKAFGDGY VTPANIDDAL 720
  721 EEKKG