YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87045961
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	219	0.63
Transmembrane Helix	220	240	0.78
Non-Cytoplasmic	241	246	0.64
Transmembrane Helix	247	269	0.85
Cytoplasmic	270	293	0.70
Transmembrane Helix	294	315	0.89
Non-Cytoplasmic	316	329	0.72
Transmembrane Helix	330	351	0.88
Cytoplasmic	352	389	0.70
Transmembrane Helix	390	410	0.89
Non-Cytoplasmic	411	432	0.77
Transmembrane Helix	433	453	0.68
Cytoplasmic	454	466	0.51
Transmembrane Helix	467	490	0.85
Non-Cytoplasmic	491	536	0.57
Transmembrane Helix	537	559	0.86
Cytoplasmic	560	606	0.56
Transmembrane Helix	607	628	0.92
Non-Cytoplasmic	629	632	0.50
Transmembrane Helix	633	655	0.89
Cytoplasmic	656	659	0.46
Transmembrane Helix	660	674	0.60
Non-Cytoplasmic	675	675	0.01
Transmembrane Helix	676	690	0.64
Cytoplasmic	691	715	0.51
Transmembrane Helix	716	735	0.83
Non-Cytoplasmic	736	783	0.52
Transmembrane Helix	784	803	0.93
Cytoplasmic	804	813	0.57
Transmembrane Helix	814	839	0.58
Non-Cytoplasmic	840	861	0.48
Transmembrane Helix	862	885	0.89
Cytoplasmic	886	929	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKDCKLNL KLIETISSYD TQQNNSNMTE KDLAGQPTIQ SVGSHLQVQD HEVNLQAIIS  60
   61 NPLSIGEVAT TLTESQKWFV LKRLHFDALV SLEELPPQAS FIFEKIEQMT TEEAVEILRK 120
  121 AIEEHATDVN IPEHDLDLWK ELVENSHKFT KVQLQEKLGS NSSSSVEGEK TADVEKGHEI 180
  181 VDWDLQVRLE SVLVAYWSPY PEVRAVTFPY DDPTIPAETF RVYLIGIIWT AIGAVINQFF 240
  241 TERRPSITLA MSVVQVFLYP SGLLCEWILP KWKFKIWKLS IDLNPGPYTY KEQMLATIFC 300
  301 GVTGGGTSYV AWNILMQKSP VFYDNKWVDF GYQVLLILST NFLGVGLAGI MRKFAVYPTK 360
  361 AVWPSILPGL ALNKTLMTPA RKEIINGWKI SSYNFFFIAF IGSFLYFWVP DYLFQALSTF 420
  421 NWMTWIKPDN QNLAVVTGSV GGLGLNPITT FDWNYFSSML QPLQVPFFNP VNNIIGMSIA 480
  481 FFCILGVWYS NYKWTGYLPI NDNGLYSNTG EPYSVRSVVD ANSLFDQAKY NEMGPPFYTA 540
  541 ANLVVYGAFF AIYPFHFVYE IGMNYDQMWD ACKSFWRVIK DFKKSTYDGF DDPHSTMMRA 600
  601 YPEVPEWAYL IIVVISLVLA ILCVKVYPAE TPVWGIFFAL GINFVFLIPL TTIYARTGFA 660
  661 FGLNVLVELI VGYAIPGNGL ALAFIKALGY NIDGQAQNFV NDLKQGHYAK LPPRAVYRVQ 720
  721 LLSIFIASFI QLGILNFQVN GGIKDYCDPK NTQRFTCPNG RTFYSASVLW GVIGPKKVFN 780
  781 GLYPILRWCF LIGFLIAFPC IAIKKWGPRK YVKYFEPSIV IGGFLNYAPY NLSYYIPGLY 840
  841 VSFTFMSYIK RKYEAWWQKY NYILSTGLNA GIAFSSIIIF FAVMYHAKDI NWWGNTVMYE 900
  901 GMDGSMTGWL NATVDAPDGY FGPRIGHFP