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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|87045963
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKNPTTEL SVPNIEAVGS HLQVQDHEIN LQAIISNPLS IGEVATTLTE SQKWFVLKRL  60
   61 HFDALVSLDE LPPQASFIFE KIEQMTTEEA VEILEKNIEE HETDVNIPEN DLVLWKELVE 120
  121 NSHKFTKVQL QEKLGSNSSS SVEGEKTADV EKGHEIVDWD LQVRLEAVLV AYWSPYPEVR 180
  181 AVTFPYDDPT IPAETFRVYL IAIIWTAIGA VINQFFVERQ PAITLAMSVV QVFLYPSGLL 240
  241 CEWILPKWKF KIWKLSIDLN PGPYTYKEQM LATIFCGVTG GGTSYVSSNI LMQKSEIFYD 300
  301 NKWVDFGYQV LLILSTNFLG IGLAGIMRKF AVYPTKAVWP SILPGLALNK TLLTPAKKEV 360
  361 INGWKISGYN FFFIAFVASF LYFWVPDYLF QALSTFNWMT WIKPDNQNLA VVTGSVGGLG 420
  421 LNPITTFDWN YFSSMLQPLQ VPFFYPVNNI IGMAIAFFCI IGVWYSNYKW TGYLPINDNG 480
  481 LYTNTGEPYS VRSVVDANSL FDQAKYAEMG PPFYTAANLV VYGAFFAIYP FHFVYELGMN 540
  541 YDQMWDAFKS FWRVIKDYKK STYDGFDDPH STMMRAYPEV PEWAYLIIVV ISLVLAILCV 600
  601 KVYPAETPVW GIFFALGINF VFLIPLTTIY ARTGFAFGLN VLVELIVGYA IPGNGLALAF 660
  661 IKALGYNIDG QAQNFVNDLK QGHYAKLPPR AVYRVQLLSI FISSFIQLGI LNFQINGGIK 720
  721 DYCEPGNTQK FTCPSSRTFY SASVLWGVIG PKRVFNGLYP ILRWCFLIGF LIAFPCIAIK 780
  781 KWGPRKYVKY FEPSIIIGGF LNYAPYNLSY YIPGLYVSFT FMSYIKRKYE AWWQKYTYVL 840
  841 STGLNAGIAF SSIIIFFAVM YHEKDINWWG NTVMYSGVDY AMTGWLNATV DAPDGYFGPR 900
  901 VGHFP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle