YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5658, orf1...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELPTDLED TYTKTFKPNK KNAFEFSAVT DFITKYKKIV LFIVTFVCLS LFTNVPYIPH  60
   61 FRQAPPKVVI ILAANEGGGV LKWKSPQEWS VERSSIANKK NYAKVHGYGL TIKDMTIKKR 120
  121 YSHEWRESWE KVDILKQTMR QFPDTEWFWW LDLHTYIMEP QISLEKHFLN NLYNATYRTL 180
  181 DTFNPLNLPT DLPYVDYNQP IDMVITQDCG GFNLGSFLIR RSEWSEMLLD IWWDPAMYEQ 240
  241 MHMQWEHKEQ DALETLYSTQ AWIRERIAFL PLRQINAFPP GACSDQADDP QYFFQNHDFV 300
  301 VNMAGCEWGR DCWGEMEHYK ALSKKLHKRW WKFWE

Type	Start	End	Confidence
Cytoplasmic	1	38	0.77
Transmembrane Helix	39	58	0.76
Non-Cytoplasmic	59	335	0.95