YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.5654, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYISLQCNDQ QYTNFYKSFA FLDSPSINWK TIIVGFTIGQ YVFETYLDLR QYRVLQSKTA  60
   61 PKSIEKEVSQ ETFDKSQEYS RAKAQFSVFS STFSLLQNLA IFKYDLLPKT WTLAGTIMKS 120
  121 SAAVLPKAMS GVITQSLFFV FTTQILTTLI GLPLSYYKNF VLEERFGFNK QTIGLWVSDM 180
  181 LKGIGISIVL GSPVIAGFLK IIDYFDDKFI FYLMGFILVV NLIAMTIVPT LIMPLFNKFT 240
  241 PLEDGELKTA IEKLALEQKF PLTKLFVIDG SKRSSHSNAY FTGLPWSKQI VLFDTLIEHN 300
  301 STEETVAVLA HEIGHWKLNH LPKMITMMQG HLFLIFSLYS AFIHNKSLYT SFGFVKQQPI 360
  361 LIGFMLFNDI FQPVECLLTF VSNLISRKHE YEADKYASDC GYSEELSRSL IKLSNENLSS 420
  421 MNADWLFSSY HYSHPILPER LSALGYVSKV KVKKDE

Type	Start	End	Confidence
Cytoplasmic	1	130	0.75
Transmembrane Helix	131	157	0.72
Non-Cytoplasmic	158	179	0.48
Transmembrane Helix	180	202	0.87
Cytoplasmic	203	208	0.47
Transmembrane Helix	209	233	0.89
Non-Cytoplasmic	234	324	0.49
Transmembrane Helix	325	343	0.72
Cytoplasmic	344	456	0.45