YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68485387, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLWRNLVYN ITLPFKNLNK EDRIIQLCRL FTCLIAIVCC LACIVAPRVT NTTYAARINC  60
   61 SHLDVANGLY ESLRNSVTQV FTPAIFNDQM SGTGNSLTTS EIKLITEYAE TQVAGSPQYC 120
  121 ISSLWTWCYG NYETYTVVGK DGEIYTKKKN EVLTCTDKSS YVFDYINQLE SIGLEIILAY 180
  181 AYQSSTFTTT SYEKQVSSRN AKFQLAFNGI IFTCCAQFVI LICIFVIYSN RGSSRDLSKI 240
  241 PSLVLHVVTL ISLASSLSII IGSAMITNLF IITRNEIKSK LGDFGVTFHM GSKWFSFLSL 300
  301 SAVFATLSSM SWIFPMWCAN PSISLTDQDD VVSFYEVPTR RTEFERHTDF RAKRSTAKFK 360
  361 SFEPNSGHGR NKIGNIFHNP RHSAHQDDHH EEEMRKLGES LSKKSSVRRT KSLGARKAEL 420
  421 EEQGILLDNF TFKDEYPTIQ EETYDGYSSR SVSRSASDKV SRKVSDKRQR HLIREVIKSP 480
  481 FDEEDKTDGI SPRNSYLEDD ELQLLDNQMF NLKK

Type	Start	End	Confidence
Cytoplasmic	1	26	0.60
Transmembrane Helix	27	46	0.54
Non-Cytoplasmic	47	204	0.71
Transmembrane Helix	205	228	0.92
Cytoplasmic	229	242	0.62
Transmembrane Helix	243	266	0.85
Non-Cytoplasmic	267	293	0.64
Transmembrane Helix	294	315	0.92
Cytoplasmic	316	514	0.68