YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9963, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	73	0.97
Transmembrane Helix	74	95	0.91
Cytoplasmic	96	103	0.93
Transmembrane Helix	104	122	0.90
Non-Cytoplasmic	123	128	0.68
Transmembrane Helix	129	150	0.92
Cytoplasmic	151	160	0.82
Transmembrane Helix	161	182	0.86
Non-Cytoplasmic	183	191	0.79
Transmembrane Helix	192	212	0.94
Cytoplasmic	213	312	0.93
Transmembrane Helix	313	334	0.80
Non-Cytoplasmic	335	340	0.72
Transmembrane Helix	341	363	0.91
Cytoplasmic	364	370	0.93
Transmembrane Helix	371	392	0.95
Non-Cytoplasmic	393	400	0.73
Transmembrane Helix	401	422	0.92
Cytoplasmic	423	432	0.86
Transmembrane Helix	433	454	0.87
Non-Cytoplasmic	455	459	0.82
Transmembrane Helix	460	478	0.95
Cytoplasmic	479	496	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISIPSGLT LNLISSVSVI CLGSLQFGYH MAELNSPELV LSCKRSQPGP VPYRDSFFGR  60
   61 NGFKQCIPMT PDQIGLVTSI FSIGGLFGSF YVGHLADKYG RKKTSLLHCL LYIIGSTING 120
  121 LSNTYASLLL GRFICGLGAG SALVITSIYI NEVSPIETKG LLGSMNQFSI NIGILFTQLL 180
  181 SLNWSNDNDW RWLLFMAAFI AVANVIVVSS YLNESPVWLA NQGDTAEAFT ILHRLRGGSY 240
  241 SVATDEVNSW KSQGRGTTPE SDMLLEEGNG NEHNSGTGSS GAPGGNSNKN LVTVVDYVTL 300
  301 PEYRNSLIAS TGILVLQQFD GINSIIFYGV SVLVSIFPNH SIIINCLISL VNVIVTFISA 360
  361 TIVDKLGRKP LLLLSVSFLG IATVLMGLGI IWTSSLLSIA GTFTYITFFA IGMGPIPFLL 420
  421 VGEVTQPIAK ASAQSWGTSM NWIATFIVGY TFPVLKEWLG GSVYFIFTVM CCASVWFIKT 480
  481 KVPETKGKHS YQEVWN