YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2412, orf1...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLNKIIFL SAFLASGFLL ILLSCALYNN YHTLWVILIF LLAPLPNLIA NSIESARDYN  60
   61 FLTFNDYGNS NDSTQSPLQE FGKYITGFLI VSGIALPLTF YHCGLIELGA TIMSIIGGLI 120
  121 VYSDIIIFIW FFNTEEEEHD DFNF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	32	0.54
Transmembrane Helix	33	53	0.71
Cytoplasmic	54	83	0.54
Transmembrane Helix	84	104	0.89
Non-Cytoplasmic	105	109	0.43
Transmembrane Helix	110	132	0.90
Cytoplasmic	133	144	0.53