YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9437, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	59	0.69
Transmembrane Helix	60	85	0.70
Cytoplasmic	86	93	0.76
Transmembrane Helix	94	113	0.86
Non-Cytoplasmic	114	125	0.71
Transmembrane Helix	126	144	0.73
Cytoplasmic	145	224	0.75
Transmembrane Helix	225	242	0.71
Non-Cytoplasmic	243	255	0.80
Transmembrane Helix	256	276	0.77
Cytoplasmic	277	280	0.64
Transmembrane Helix	281	301	0.62
Non-Cytoplasmic	302	377	0.63
Transmembrane Helix	378	396	0.74
Cytoplasmic	397	416	0.86
Transmembrane Helix	417	440	0.80
Non-Cytoplasmic	441	451	0.72
Transmembrane Helix	452	473	0.90
Cytoplasmic	474	602	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISIIQNGIS QLSSVSGLDE ANLKILICTL LSFPFGIIFK RLPDHDYTLK NIYNVAVSCF  60
   61 YVFGICDLRF GISTLLISAT GSYFITRYVR TKSMPWINFL FLMIHMAYSH FHLQFFKEYD 120
  121 PKSIDITGAQ MILVMKLSAF GWNIHDGKQP RSTLNDFNKA RAITKHPNVL PYIGYVFFYA 180
  181 SLLTGPAFDY ADYDKFIHGT LFDDVPQDKR PGKNKRRIPR SGVQAFKKFS LGFFWAFLLL 240
  241 QSDKFVTMEY MFSPEFVQYH GLFYRIIYMW ILGFTFRLKY YTIWTIAEGA CILCGIGYNG 300
  301 VDPETGEFKW NRVQNIDPWS FETGQNVHAC LEAWNQNTNI WLKNYVYLRV AKPGKKPGFK 360
  361 STIFTFTTSA FWHGTRPGYY LTFVVGALMQ TVGKYYRRNF RPIFLEADGK TPKPTKIVYD 420
  421 FVCWVNTQLA FGFFVQPFVI LGFTKSLECW ATVYYWLLWV IAISFFAFSG PFAKSVSKFF 480
  481 KSLQPSYKEQ QRKSREDKYK LNNEEASIVE QAVGAKLGQD YDIPALGLPP FDVFTDFDQT 540
  541 EVDHDIQHLR KAWTSFRGRR GSITENDFDG LKDAYNNFTN EINDIFNTKK EEFKKEKLNK 600
  601 QN