YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8748, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIADKRDDG DTTIYMTLTS TSTLGSKSSP NASPTNVIQI VSWVAQTIET TIVTSTPVLK  60
   61 VPSTSQVNTV TSKSITTVSN TAETKKVIGS SSADATISPS QSDFLSPTAS KKVGAVSTIP 120
  121 IQNSFSDVSY STGNRSLQIG LAIGIPIAIF SIFFIVLGIW YYIRERKRKR KTLSFNEKYY 180
  181 KPRESDATLT ADKPYLVLFS PGAYFKDERQ YELPQKRDRL TIRLSKSFPI RKKEKEISST 240
  241 VNFAKRMSVL TPIFLKKFNL KKTIEENNET VKPQILSIPE NPRENAMKPT DNLNLPPVIT 300
  301 IGSSGLDPVR GGISPEQSLY TVIRSYNKSL GDELNIEVGD KAVILEKHSD GWCKIRLVRM 360
  361 GKDYYNHQLS SDIGLVPKMC LQKI

Type	Start	End	Confidence
Non-Cytoplasmic	1	138	0.89
Transmembrane Helix	139	163	0.92
Cytoplasmic	164	384	0.91