YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8735, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	243	0.98
Transmembrane Helix	244	263	0.93
Non-Cytoplasmic	264	268	0.86
Transmembrane Helix	269	291	0.91
Cytoplasmic	292	310	0.93
Transmembrane Helix	311	334	0.90
Non-Cytoplasmic	335	353	0.94
Transmembrane Helix	354	373	0.95
Cytoplasmic	374	382	0.83
Transmembrane Helix	383	403	0.95
Non-Cytoplasmic	404	425	0.91
Transmembrane Helix	426	446	0.93
Cytoplasmic	447	458	0.88
Transmembrane Helix	459	482	0.89
Non-Cytoplasmic	483	500	0.96
Transmembrane Helix	501	523	0.90
Cytoplasmic	524	546	0.85
Transmembrane Helix	547	563	0.98
Non-Cytoplasmic	564	570	0.80
Transmembrane Helix	571	591	0.95
Cytoplasmic	592	611	0.93
Transmembrane Helix	612	633	0.93
Non-Cytoplasmic	634	639	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPQSIKKT ERRRSIALLT KSPLSQSPYI SPSPRGSAPS SYVANSQFMR GDTESVAMES  60
   61 TSENSSENQH SPENDPEVDN DIDLASGIDD PELIRKVSKH LPSDFDSLKQ EGADITRDLY 120
  121 RIKEDAQRPL LKKSRSCDSI GGNSIKSTAS SFNVPGGFRR EFLLNQQQHR DERLESLRTT 180
  181 TPNFLTKNFI EFLSIYGHFA GEELEDDENI ANHYKYLLPH EQAPLLQDDN FNPRGTATDR 240
  241 KAYFLLLKAF VGTGVLFLPK AFYNGGLSFS IIVLSLFALL SWWCYLILVF TKVATKVSGF 300
  301 AEIGLKLYGP WFQRLILSSI VISQIGFAAA YIVFTSENLR AFTANVSSYD VTDINIVWFI 360
  361 LLQVVIIVPL SLIRDITKLS LSAVFANVFI LTGLVTIVYF MLYQWLGVNH GYFGKNIEYF 420
  421 FNESEFSLFI GTAIFAFEGI GLIIPIQESM IHPNNFPRVL GQVILTIAVI MIMVGSLGYL 480
  481 TFGDKIKTVV LLNLPQDSPM VIITQLLYSL AILLSTPLQL FPAIRLLESK MIFGSGKSSP 540
  541 SVKWLKNLFR TLFVVFIAYI AYIGGQNLDK FVSFVGCFAC IPLVYMYPPI LHLKSCCKIH 600
  601 SGLSEKEQNN RFWLSLANYV LLVIGAISFV YTTYEILFT