YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1308
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	102	0.82
Non-Cytoplasmic	103	111	0.69
Transmembrane Helix	112	131	0.90
Cytoplasmic	132	140	0.86
Transmembrane Helix	141	160	0.95
Non-Cytoplasmic	161	166	0.66
Transmembrane Helix	167	189	0.87
Cytoplasmic	190	201	0.78
Transmembrane Helix	202	223	0.92
Non-Cytoplasmic	224	230	0.81
Transmembrane Helix	231	251	0.95
Cytoplasmic	252	271	0.93
Transmembrane Helix	272	293	0.93
Non-Cytoplasmic	294	302	0.77
Transmembrane Helix	303	326	0.90
Cytoplasmic	327	346	0.84
Transmembrane Helix	347	366	0.89
Non-Cytoplasmic	367	379	0.86
Transmembrane Helix	380	400	0.91
Cytoplasmic	401	408	0.78
Transmembrane Helix	409	427	0.97
Non-Cytoplasmic	428	437	0.82
Transmembrane Helix	438	462	0.84
Cytoplasmic	463	479	0.80
Transmembrane Helix	480	498	0.50
Non-Cytoplasmic	499	549	0.55
Transmembrane Helix	550	570	0.88
Cytoplasmic	571	581	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQDHNTIH PNVIQDVSTE APGIVAGELA AEDEGLLSND ALKTHTYGSV STPETTHYEI  60
   61 DDPNGGYALP KTQLYTVVSS LFMASFLAAL DGTVVTTLLT LIASELHAVS NISWIATAYL 120
  121 LSSAAFQPIF GKLSDIFGRK ALLLGCSTLF AVGCAICGAA DSVLVLVIGR FVTGCGGSGL 180
  181 TSLGTITMSD IIPLRDRGYY QGLANIFFGL GAASGGAIGG LLADWLGWKY VFILQVPLAL 240
  241 SVFFAIYFFL NLPEGSPGLG MEGNVSEKLK RVDFLGSFFL VSSLMVFLSA ASLGGREIAY 300
  301 SSFTFIGLII SAFVLLTAFV AVELYVSEEP ILPIELFANR TVLASSLTNW FYTMSIFTTL 360
  361 FYVPIYYSSV IGLTPTENGL RLVPNFFGVS FGSVGAGIYM KKTGRYYKLA VLAGIFAIFG 420
  421 IGKIALLTPN IPTWQQFLLL IPSGLGYSCI LTVTLLALIA AAPLKYQACT TSIQYTFRST 480
  481 GSTLGVSAAT AVFQNVLLLQ LTKKINELVS DPREAAKIIA KALDSTEYVN EAPKYVREAI 540
  541 RASYDAGCKG AFGFAFATIV LGVISSLFMR EHVLHTSINR D