YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	47	0.88
Non-Cytoplasmic	48	69	0.85
Transmembrane Helix	70	92	0.89
Cytoplasmic	93	99	0.83
Transmembrane Helix	100	119	0.93
Non-Cytoplasmic	120	124	0.93
Transmembrane Helix	125	148	0.91
Cytoplasmic	149	157	0.89
Transmembrane Helix	158	180	0.88
Non-Cytoplasmic	181	191	0.76
Transmembrane Helix	192	211	0.96
Cytoplasmic	212	283	0.97
Transmembrane Helix	284	304	0.83
Non-Cytoplasmic	305	315	0.75
Transmembrane Helix	316	337	0.87
Cytoplasmic	338	344	0.90
Transmembrane Helix	345	365	0.94
Non-Cytoplasmic	366	394	0.89
Transmembrane Helix	395	418	0.88
Cytoplasmic	419	429	0.88
Transmembrane Helix	430	451	0.84
Non-Cytoplasmic	452	459	0.77
Transmembrane Helix	460	479	0.94
Cytoplasmic	480	545	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKIERIFS GPALKINTYL DKLPKIYNVF FIASISTIAG MMFGFDISSM SAFIGAEHYM  60
   61 RYFNSPGSNI QGFITSSMAL GSFFGSIASS FVSEPFGRRL SLLTCAFFWM VGAAIQSSVQ 120
  121 NRAQLIIGRI ISGIGVGFGS AVAPVYGAEL APRKIRGLIG GMFQFFVTLG IMIMFYLSFG 180
  181 LGHINGVASF RIAWGLQIVP GLCLFLGCFF IPESPRWLAK QGQWEAAEEI VAKIQAHGDR 240
  241 ENPDVLIEIS EIKDQLLLEE SSKQIGYATL FTKKYIQRTF TAIFAQIWQQ LTGMNVMMYY 300
  301 IVYIFQMAGY SGNSNLVASS IQYVINTCVT VPALYFIDKV GRRPLLIGGA TMMMAFQFGL 360
  361 AGILGQYSIP WPDSGNDSVN IRIPEDNKSA SKGAIACCYL FVASFAFTWG VGIWVYCAEI 420
  421 WGDNRVAQRG NAISTSANWI LNFAIAMYTP TGFKNISWKT YIIYGVFCFA MATHVYFGFP 480
  481 ETKGKRLEEI GQMWEERVPA WRSRSWQPTV PIASDAELAR KMEVEHEEDK LMNEDSNSES 540
  541 RENQA