YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4526, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAVSTLSD IIKRNDAVNV NPPNPIIDLH ITEHGSDWLW AVFSVFALFA IVHGFIYSFT  60
   61 DVRKSGLKRA LLTIPLFNSA VFAFAYYTYA SNLGYTWILT EFNHAGTGFR QIFYAKFVAW 120
  121 FLGWPLVLAI FQIITNTSFT TTEDESDLLK KFISLFEALF TRVLAIEVFV LGLLIGALIE 180
  181 STYKWGYFTF AVVFQLFAIY LVINDVVVSF GSSSHSVFGN ALILAFVIVW ILYPVAWGLS 240
  241 EGGNVIQPDS EAVFYGILDL ITFGVIPIIL TWIAINNVDE EFFTKIWHFH LKPENEHAPT 300
  301 ATEDVEKAVG ETPRHSGDTA VAPSGVPDTG VAQAQAEAEE RI

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.98
Transmembrane Helix	38	59	0.93
Cytoplasmic	60	69	0.87
Transmembrane Helix	70	90	0.92
Non-Cytoplasmic	91	116	0.87
Transmembrane Helix	117	139	0.84
Cytoplasmic	140	157	0.93
Transmembrane Helix	158	179	0.93
Non-Cytoplasmic	180	185	0.85
Transmembrane Helix	186	208	0.88
Cytoplasmic	209	216	0.82
Transmembrane Helix	217	237	0.93
Non-Cytoplasmic	238	252	0.92
Transmembrane Helix	253	275	0.91
Cytoplasmic	276	342	0.98