YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4494
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFWFAFRDS DRYVYYIIID KLILFFFFRP LCFFLLSLIV CLLLFYVSFL TSNRLHSLWT  60
   61 ITIPPRSPTM TSYSIAFISG VILSIYYYFV LNYFSELKFS EPPYQRYNPL AKDQPKLASN 120
  121 QYLDKIYPPE NRKQIGKENA TMVMLVRNIE LEGALESMRS LEDRFNRDYK YPWVFLNDEP 180
  181 FTEEFMEKTT LMASGETFYE LIPVEDWQPP IFINETKLQE NLDNSKTNVI YGGVRSYRNM 240
  241 CHFNSGFFYK QKKLLNYDWY FRVEPNVEYM CDFQYDPFEF LRINNKIYGF IIAITEYENT 300
  301 IPNLWPTVES FMKKHPELLH PNNAIEFLTS KEISLNHYMD LIPSATDYNL CHFWSNFEIG 360
  361 NLNFFRNESY ETFFQYLDHT GGFYYERWGD APVHTIGLSL LADKDSIHHF EDIGYYHAPY 420
  421 LACPSADDVL ASKRCVCVSR QSEDKINRTI DTNIYSCLPR WWKYGSGKRF LNQIDYKRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.60
Transmembrane Helix	26	50	0.87
Cytoplasmic	51	69	0.72
Transmembrane Helix	70	90	0.94
Non-Cytoplasmic	91	479	0.81