YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4174, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.93
Transmembrane Helix	35	57	0.87
Non-Cytoplasmic	58	71	0.82
Transmembrane Helix	72	92	0.83
Cytoplasmic	93	106	0.76
Transmembrane Helix	107	129	0.90
Non-Cytoplasmic	130	134	0.79
Transmembrane Helix	135	157	0.85
Cytoplasmic	158	172	0.55
Transmembrane Helix	173	195	0.90
Non-Cytoplasmic	196	211	0.82
Transmembrane Helix	212	235	0.91
Cytoplasmic	236	281	0.81
Transmembrane Helix	282	303	0.90
Non-Cytoplasmic	304	321	0.78
Transmembrane Helix	322	343	0.81
Cytoplasmic	344	359	0.77
Transmembrane Helix	360	379	0.86
Non-Cytoplasmic	380	390	0.78
Transmembrane Helix	391	414	0.83
Cytoplasmic	415	426	0.72
Transmembrane Helix	427	450	0.90
Non-Cytoplasmic	451	453	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDSTDSPA TNNIHDPTIF QINGLLKIKL SQFKYFTFTV IGIALLWPWN CFLSASAYYG  60
   61 ERFVNSPSLV KVYSSTMMSV STITSTAYNF YLSQRQTNVN YNFRVQVGFY ITIFVFLFMA 120
  121 VSCVSDWIID MNDSAFFTTL MFMVLLSAMA TCLAQNGTMA IVNVLGGIYA NAVMVGQAVA 180
  181 GVLPACALII SILLVGDKVS DQHHRVEKNY GVFVYYITAS LVCIISLLLL YLVTYHKNEV 240
  241 GYQRLNQLVE EDDSGAVDEQ EVVDPIHTQK KFVPFTVLWG KLNLIVMTIF FTFGITLIFP 300
  301 VFASVVESVH TDSQSRFLNK NIYIPFIYLV WNLGDLLGRV LCGYPRLNML IKSPKTQLVY 360
  361 ALSRLVFIPL FLTCNIHPGQ SEPFIKSDLW YIGLQLLFGI SNGQLCTSAF MIVGDYCDTD 420
  421 EEKEAAGGFT TVFLSTGLAV GSVLSYLLVL AVN