YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.14199, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.84
Transmembrane Helix	67	84	0.50
Non-Cytoplasmic	85	113	0.64
Transmembrane Helix	114	134	0.79
Cytoplasmic	135	143	0.67
Transmembrane Helix	144	164	0.93
Non-Cytoplasmic	165	172	0.61
Transmembrane Helix	173	195	0.82
Cytoplasmic	196	224	0.81
Transmembrane Helix	225	248	0.80
Non-Cytoplasmic	249	256	0.67
Transmembrane Helix	257	278	0.92
Cytoplasmic	279	341	0.87
Transmembrane Helix	342	364	0.72
Non-Cytoplasmic	365	374	0.77
Transmembrane Helix	375	395	0.89
Cytoplasmic	396	409	0.87
Transmembrane Helix	410	431	0.92
Non-Cytoplasmic	432	456	0.93
Transmembrane Helix	457	478	0.90
Cytoplasmic	479	487	0.89
Transmembrane Helix	488	510	0.91
Non-Cytoplasmic	511	516	0.87
Transmembrane Helix	517	538	0.94
Cytoplasmic	539	576	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEEKHSQT DVINSSTQGS HSVEKSSRDD EYAGDNLGSD IQIDDEGREP TDHEMETLRH  60
   61 VSESIPISCW LVAIVELAER FSYYGLSAPF QNYMQFTPEH SPKGMLGLKQ QGATALSYFF 120
  121 QFWCYVTPIL GGWISDTYWG KYKTIFVFCV IYIVGIFLLF ITSVPSITSK STATGGYIAA 180
  181 IIIIGLGTGG VKSNVSPLIA DQIPKKKPYI KVTKKGERVI VDPNITVQNV FMFFYLMINI 240
  241 GSLSVIATTQ MEAHIGFWSS YLLTFCFFFI AIAALIVGRN KYVKVPVGDK IVNKTFKCVW 300
  301 VGIINGFNFD AAKPSVKPEK SYPWDDHFVD EVKRTISACK VFVWYPIYWV QYNGMMNMFV 360
  361 SSAAGMSRDI PNDFLTVFDS VAIIVFIPIF ERFLYPFVRH FTPFKPITKI FWGFMFGSGA 420
  421 MVYAAVLQHY IYKAGPCYDH PLDCPNGNHI NIGLQTPAYV LIAISEILAS ITGLEYAYTK 480
  481 APVQMKSLVM AMFLLTNAVG AAIGIALSSV SVDPKMVWTY SGLAVSCFIA GCLFLTLFKH 540
  541 YNKKEDEWNN LEYEANIEEA ALMPVSSLTP SRKSIA