YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPE10_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPIRSSITR ILPNGFSSKL FLRQLNKKSK PNPHKNKNFD SFNEVFIHKT LLSSINQHND  60
   61 TDYVRCSIFN ANGDMIQHGK EILKSQFIKR YNLTPRDFRK FNWQRSATGT TTSSSSSSSS 120
  121 AGQTSSGTSK SSSLSSSSSS PHSTISALSL SNSSLGSSTN VDIVPNITIR RNSILVQLLN 180
  181 IRALINHDQL IIFDNSSSFQ NSHVSSYTHS QFLKDLSQRL KSTNLDGLPF EFKALEGILI 240
  241 YIVSNLNMEM KVHNTVLQNI ITGLEDSIDR NKLRYLLIES KKIHQFHRKI TLIKNCLEDL 300
  301 LENDDELNDL YITEKFNSEG DGQPRQGTNH EEIEMLLENY YQTIDEIVQI VENLKNQIKT 360
  361 TEDLINVVLD SNRNQLMLLG LKFSTGLLSM GVALYVSALY GMNLENFIEE IDGGFEVVTV 420
  421 VSTIALIALL LFSVKQLKKV EKVTMTSLND QRK

Type	Start	End	Confidence
Cytoplasmic	1	378	0.93
Transmembrane Helix	379	399	0.89
Non-Cytoplasmic	400	412	0.81
Transmembrane Helix	413	434	0.89
Cytoplasmic	435	453	0.93