YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3458
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHNHSSNLF RFASIQLPKS AKLRSFGIYL SGALFAIGFW SLVDASIYSK TINASDVHVN  60
   61 FIDWIPFLAS SMGMLIVNSI EKSNLMINPN NQSDFTGSGG NGGGHAWAAR IILFMGFSLL 120
  121 AGGLAGSFMV FILKYLMNHY TFPTLGMGVA NIVCNGCVML SCIFLWLSQN IEDEYSYSLA 180
  181 L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	60	0.80
Transmembrane Helix	61	80	0.78
Cytoplasmic	81	110	0.76
Transmembrane Helix	111	133	0.91
Non-Cytoplasmic	134	144	0.65
Transmembrane Helix	145	167	0.91
Cytoplasmic	168	181	0.77