YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1193, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.92
Transmembrane Helix	72	93	0.88
Non-Cytoplasmic	94	99	0.68
Transmembrane Helix	100	118	0.82
Cytoplasmic	119	153	0.74
Transmembrane Helix	154	177	0.82
Non-Cytoplasmic	178	185	0.70
Transmembrane Helix	186	203	0.95
Cytoplasmic	204	212	0.64
Transmembrane Helix	213	235	0.86
Non-Cytoplasmic	236	255	0.76
Transmembrane Helix	256	277	0.73
Cytoplasmic	278	296	0.92
Transmembrane Helix	297	318	0.94
Non-Cytoplasmic	319	346	0.84
Transmembrane Helix	347	369	0.79
Cytoplasmic	370	396	0.94
Transmembrane Helix	397	416	0.92
Non-Cytoplasmic	417	424	0.75
Transmembrane Helix	425	446	0.90
Cytoplasmic	447	470	0.90
Transmembrane Helix	471	493	0.84
Non-Cytoplasmic	494	504	0.82
Transmembrane Helix	505	525	0.91
Cytoplasmic	526	579	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKEDQAVS KEVRPEELGS FTGSEEKYSS NEFLNTESKT GFQNFIDSFR RKQATEDESA  60
   61 GQQLAKGISK RHLILMSLVT GIGTGLLVGT GQVLRKSGPL FLVVGYAIAG SFVYPTLQAA 120
  121 GEMAVNYSEL SGGYNSYTRM FVEDSINFAI SWNYCIQWLS VISIELVTAA ITIEYWISET 180
  181 RVNPDAWVAI FYVVIVVIHF IGSKAYGEFE FIIGSIKVCL LVGFIIMGIV VDTGGGPTGE 240
  241 FIGGRYWRDP GPTKNGFKGF CSVFVTAAFS YGQSEFVALS AAEQPNPRKA IPTACRLIFW 300
  301 RIIVLFLGSL TIVGLLVPSN SDHLMSEGGG SNTSPFVLSA ALHGVKAVPS IINAVILMSV 360
  361 TSVASSSLYS ASRTLQSLAE QGFAPTWFNY IDRAGRPTRA LLVSAIIGLF AFIAAYKKQV 420
  421 TVFNWLLAIS GLSQVFTWSG ICLSHVRFRQ ALKYNNISTD ALGYKASTGV WGSYYALVWY 480
  481 ALVLISQFWI ALFPIGASKP DANNFFQSYL GAIVLVVFYI GHKLYTRKWR LLIPISEIDI 540
  541 NNERTIFDEE ILNLERQEEQ DKWDRAPWHK KIMIFAFSH