YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13560, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.97
Transmembrane Helix	50	72	0.86
Non-Cytoplasmic	73	102	0.87
Transmembrane Helix	103	121	0.93
Cytoplasmic	122	128	0.83
Transmembrane Helix	129	148	0.93
Non-Cytoplasmic	149	156	0.80
Transmembrane Helix	157	179	0.92
Cytoplasmic	180	190	0.89
Transmembrane Helix	191	211	0.87
Non-Cytoplasmic	212	223	0.84
Transmembrane Helix	224	245	0.91
Cytoplasmic	246	314	0.97
Transmembrane Helix	315	338	0.81
Non-Cytoplasmic	339	353	0.78
Transmembrane Helix	354	377	0.88
Cytoplasmic	378	385	0.87
Transmembrane Helix	386	407	0.89
Non-Cytoplasmic	408	430	0.86
Transmembrane Helix	431	450	0.69
Cytoplasmic	451	471	0.63
Transmembrane Helix	472	495	0.47
Non-Cytoplasmic	496	506	0.38

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDNKKLNL LETQTTNTEK ELQEVDGEDE ISYDTEDLSA PPTPSTIYNW RIVIIAITAS  60
   61 FAAVIVGYDA GFIGGTVSLA SFQGEFKMNE LSPSQKTEIN SNVVSVFQAG AFFGALFFYP 120
  121 IGEIWGRKLG LILSAFLLVF GAGISLEAKH STGLASIYAG RVITGLGVGG CSGMAPIYIS 180
  181 ECSPAKIRGK LVGMWEMSWQ IGGIVGYWIN YGVLQNLPPS RKQWLIPFAI QLIPSGVFFI 240
  241 GTIFIPESPR FLVYKGQIDK AKVNLSQLRS IPTDHPYSVY EMENIIKDVE DKKSKLANDG 300
  301 FFAPILKLFL SKKLLYRLLL STSLFPMQNG AGINAITYYS PAIFASFGIT GSKAGLLSTG 360
  361 IFGILKAFAA LVWMFCIVDR LGRRTALIYF SFPCSICMWY IGAYIKIAKP GLRVANGDTH 420
  421 QDAGGKAAQA MLYIWTIFYG SSWNGTPWVI NSEIFSQEVR TLTQAINSMS NWFWAFIMGR 480
  481 FSGEAVKAIG YKFYFIFATC MAVFQL