YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.14150, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAKSSDLS PTKTNLESTT KQKVSVQDIF LYIPNLIGYL RIITAIISFL CMANHPVATL  60
   61 IFYGISGFLD AFDGYAARKF NQGTRFGAVL DMVTDRCATS SLIVYLGVLY PQYTVFWQIL 120
  121 VSLDLSSHYM HMYAMLSAGS TSHKNVDETQ SKLLSLYYNN RLVLFFVCLI NELFYMAVYL 180
  181 HYYKFFWLGT VMLVASTPIW LFKQIANIIQ LKNASLILAR MDAHDHSKRD

Type	Start	End	Confidence
Cytoplasmic	1	38	0.85
Transmembrane Helix	39	65	0.77
Non-Cytoplasmic	66	113	0.63
Transmembrane Helix	114	136	0.61
Cytoplasmic	137	156	0.81
Transmembrane Helix	157	178	0.82
Non-Cytoplasmic	179	184	0.68
Transmembrane Helix	185	202	0.91
Cytoplasmic	203	230	0.87