YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6642, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNPYGNAAD AYQQQQQQQY QQQQQQPHST NLQHPQPIHH VSSHQPPPGA AGGQFNFLND  60
   61 PAAALASQFA RSGFEQSNQY LQENFGSLQG DIKYYFQVSN SYVFKKIILI LMPYNHKDWN 120
  121 RVSTKETGTN QFLPPNLDIN APDLYLPLMS FVTYILLWAA FQGINGDFHP QLFGYLASQT 180
  181 IAFSVLDVVI FKTGLYLLNC PQSKIYDIIS FSGYKYVSII VLLILKYLVG NYLGLFYYIV 240
  241 VLLLIANLSI FLMRSLRFLI LPQSTSMNNT ITSKQRKIRI QFLFVYSVII QGLIILYMSK 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	143	0.98
Transmembrane Helix	144	164	0.89
Non-Cytoplasmic	165	174	0.78
Transmembrane Helix	175	196	0.85
Cytoplasmic	197	210	0.77
Transmembrane Helix	211	229	0.91
Non-Cytoplasmic	230	234	0.82
Transmembrane Helix	235	258	0.89
Cytoplasmic	259	277	0.96
Transmembrane Helix	278	298	0.91
Non-Cytoplasmic	299	300	0.83