YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1092
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.71
Transmembrane Helix	62	81	0.59
Non-Cytoplasmic	82	159	0.71
Transmembrane Helix	160	189	0.71
Cytoplasmic	190	200	0.69
Transmembrane Helix	201	224	0.83
Non-Cytoplasmic	225	243	0.69
Transmembrane Helix	244	270	0.77
Cytoplasmic	271	277	0.76
Transmembrane Helix	278	297	0.92
Non-Cytoplasmic	298	349	0.97
Transmembrane Helix	350	372	0.87
Cytoplasmic	373	421	0.69
Transmembrane Helix	422	442	0.90
Non-Cytoplasmic	443	449	0.54
Transmembrane Helix	450	472	0.85
Cytoplasmic	473	483	0.47
Transmembrane Helix	484	505	0.89
Non-Cytoplasmic	506	519	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIVQESPKE VDTVLKNQST NASTNTNTNK QQFRESPEFT LSNVLDDIKQ GIIAFLINPK  60
   61 VTIIVYPIII CLSSILTKIV INKISYTEID FITYMQQIKL INQGIIKYSE IEGDSGPIVY 120
  121 PGGFVQIYQF IQWLISSSSS SSSSTGEEIL SYDVREAQYI FSYLFTTSII FNCLIYINLI 180
  181 NIPPWTIYLF LLSKRLVSIY VLRLFNDCWT TLAILGVILI LQQASTNITE DWLVYLLVIL 240
  241 ASDLYSIAIS IKMNALLYFP GFIIIVYFLL DESLIKSTSV LIVMIFIQII MGWQFLLPLE 300
  301 LFNNDVDVRR MASIIRWDYI NQAFNFKRKF LYEWTVNWKF LSIETFTSDG FAKLLLLLHV 360
  361 FTLLVFIITR FLNSRITGKS ITSLIYQIVL PFSSSSSSSK SSSSSNGNNS NLIKNPQSGP 420
  421 QLIFIIMSIT NLIGILFARS LHYQFLSWYA WSLPGLLYLN FPIYFALPIW FVHEWCWNVF 480
  481 PSNSISSITL VSILSLIIGA TWWNFDHCVP TISQFIIYF