YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8690, orf1...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVDTLIYHP TLSKLIKFWD STPKREKTFR LLSYLSRFLG YYAYKKGYSK ETIELWSNLK  60
   61 AHFTFIRKAM RFFKPINHLQ LASKAFDNKL MDPILQFTTI IRNLGYAGYL TIDAIVFFKL 120
  121 LGIIDKKKYP NLGKYASRFW LLGLIAGLIN SLRIIYSLNS YENDQKNTQD EKVKETETET 180
  181 ETETKADTVA INQKLYQAKR KLIWDLLDTF IALNSLDILH FTEGDVGLAG VITSLLGLQD 240
  241 LWKAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	103	0.54
Transmembrane Helix	104	123	0.47
Cytoplasmic	124	135	0.66
Transmembrane Helix	136	156	0.74
Non-Cytoplasmic	157	245	0.78