YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.640, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLYPLKFN EKLAFFYNTV AATLWFCCLG RFLILLPLVG RKFLPGGMAD FFHVVSLLPI  60
   61 IESLFVKSVL RKKFTITSLW GISNGLKMVW LCYGVIFPHP KIAKHTSYSL LITSWCLQYF 120
  121 IHYFYYAFKV KTKSSFHFLF WLEYNNFYLT YPLGLVSEMI LLFLSLAFVE QDSIYDYVLR 180
  181 AAFLAYIPIA YFAWGHLKSR KKKRYTEIMN KRNVRQVATL ESTTTSTKNT SIELRNM

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	35	0.93
Non-Cytoplasmic	36	48	0.72
Transmembrane Helix	49	66	0.91
Cytoplasmic	67	75	0.77
Transmembrane Helix	76	97	0.89
Non-Cytoplasmic	98	105	0.80
Transmembrane Helix	106	126	0.93
Cytoplasmic	127	146	0.92
Transmembrane Helix	147	169	0.93
Non-Cytoplasmic	170	176	0.87
Transmembrane Helix	177	195	0.96
Cytoplasmic	196	237	0.97