YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.405, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	51	0.65
Non-Cytoplasmic	52	56	0.58
Transmembrane Helix	57	79	0.85
Cytoplasmic	80	88	0.65
Transmembrane Helix	89	111	0.78
Non-Cytoplasmic	112	122	0.72
Transmembrane Helix	123	145	0.88
Cytoplasmic	146	157	0.71
Transmembrane Helix	158	180	0.87
Non-Cytoplasmic	181	197	0.85
Transmembrane Helix	198	220	0.89
Cytoplasmic	221	263	0.86
Transmembrane Helix	264	286	0.88
Non-Cytoplasmic	287	300	0.77
Transmembrane Helix	301	323	0.86
Cytoplasmic	324	331	0.77
Transmembrane Helix	332	356	0.87
Non-Cytoplasmic	357	363	0.72
Transmembrane Helix	364	386	0.89
Cytoplasmic	387	391	0.82
Transmembrane Helix	392	412	0.90
Non-Cytoplasmic	413	416	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLPLLGGS RNQGNFMHRA KKSVYNGTLS TLKSSPVNYL LIFVPLGIIA GELEWSATAR  60
   61 FLLNFFAIVP LASVLAFATE EISEHVGQTV GGLLNATFGN AVELIVSIIA LKDNQVRIVQ 120
  121 ASMLGSILSN LLLVLGCCFV AGGITRVQQT FNQTVAQTMS SLMALATASL LIPAAFHASL 180
  181 PTPKKGGGFP EPGSSDELIL SFSRGVSVVL LIVYLFYLLF SLKTHKELFE EDQSADAILN 240
  241 ERSQNSTLDV VTGPKTEEDG HLSMTAGLVV LLLTTILVSF CADYLVGSID EIVESSGLSK 300
  301 TFIGLIVIPI VGNAAEHVTA IVVAMKDKMD LAIGVAIGSS LQIAIFVTPF MVLVGWAIDV 360
  361 PMSLYFSTFE TAILFVSVFI TNLVILDGES NWLEGAMLLS TYLIIALAFF YYPDVN