YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPC1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKREDHLR KGADVTPTEA LVAGSIAGAI SRAFTAPLDT IKIRLQLQPK GFKHRKSVVT  60
   61 IVKNLLENEG IIALWKGNVP AEILYILYGG VQFGSYSIIS KSVSKLENNY RINLSSANHS 120
  121 LIVGIGSGIV STLVTYPFDL LRTRLIANKN RGLLSMTGTI KDIIKLEGIR GIYAGIRPAM 180
  181 LSVSSTTGLM FWSYELAREL SNNYQRVPFI EAICGFIAGA TSKGITFPLD TLRKRCQMCS 240
  241 VVHGRPYTAS HIFVTILKNE GVFGLYKGFG ISVLKTAPTS AISLFMYEYS LSFIRKIRVI 300
  301 E

Type	Start	End	Confidence
Cytoplasmic	1	82	0.53
Transmembrane Helix	83	99	0.42
Non-Cytoplasmic	100	118	0.63
Transmembrane Helix	119	141	0.70
Cytoplasmic	142	172	0.68
Transmembrane Helix	173	194	0.67
Non-Cytoplasmic	195	208	0.70
Transmembrane Helix	209	227	0.54
Cytoplasmic	228	301	0.50