YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYM1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYIFNRYNA LLLRRPLITN MITTGLLVGG GDALAQFFFP NNDNNNLEQQ PFDYLRNLRA  60
   61 IIYGSLIFAP IGDKWYKFLN TKVVWTRNAQ KPQYQRSMST LLRVMVDQLV FAPFIGIPLY 120
  121 YSSMTILENR QPFLDNIIDK FNTSWWITLK SNWLVWPLFQ FFNFYLLPVQ FRLLAVNIIS 180
  181 IGWNTYLSYV MHSQK

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	39	0.87
Non-Cytoplasmic	40	59	0.90
Transmembrane Helix	60	78	0.87
Cytoplasmic	79	98	0.90
Transmembrane Helix	99	121	0.83
Non-Cytoplasmic	122	163	0.82
Transmembrane Helix	164	187	0.75
Cytoplasmic	188	195	0.78