YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8317, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIKTITRS IRAILATLYL VLIILTIPLA FDVGGVNCGL AYSLTTLVTY FILTTIRILV  60
   61 RKTKYFQWIS IIYYCQHFFI PSLLTYFLSY YSHENIKKLD LISSSGSGSS TSTSTSSKFN 120
  121 PVMIWRLVLI NSTPIFTVLE GFCSLLLIQA MGQTMSWLTI YKSDSWLIIS LIGSGSVITA 180
  181 SFYFLYRIYV LPFTIDMFSA SLLGSILTTT MGLGLFGIIS GKGSMIESSL LFAYIVKCIY 240
  241 ETFPILSEAA TKALANLFTL TTQNLKKEIP KIPPSILNPI SEVIPFITST LPSSFKGVWK 300
  301 FLIMAIKTLT LPLLLNLAYR IGVFYAATKI IPSLYQSASY PLITPPKTPQ PGSRQVSTTS 360
  361 LSTFTSSTTS TVLDQHSKLR TKNSFRLKPP HHQPPSVIIR LIYAYSPCLI IAVYTHLMLS 420
  421 YNGELGTELK LWPLWNSSNG GGGGDDDIQL IVHPWQFWNW INMGTTLILY AAELSSNDNS 480
  481 SGGGNSLTSH WKVE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	31	0.93
Non-Cytoplasmic	32	38	0.80
Transmembrane Helix	39	60	0.92
Cytoplasmic	61	69	0.81
Transmembrane Helix	70	89	0.81
Non-Cytoplasmic	90	126	0.81
Transmembrane Helix	127	148	0.86
Cytoplasmic	149	165	0.69
Transmembrane Helix	166	186	0.95
Non-Cytoplasmic	187	197	0.68
Transmembrane Helix	198	219	0.91
Cytoplasmic	220	396	0.63
Transmembrane Helix	397	418	0.72
Non-Cytoplasmic	419	456	0.67
Transmembrane Helix	457	472	0.38
Cytoplasmic	473	494	0.55