YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8315, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINSTFIPD KPGDIIISYS IPGLDQPIQI PFHSLDSFQT DQAKIALVMG ITIGSCSMTL  60
   61 IFLISIMYKT NKLTNLKLKL KLKYILQWIN QKIFTKKRND NKQQQQQQQQ QIESSSYNNT 120
  121 TTTTSGSYKL FLFYLNSLIL LIGIIRSGCY LNYNLGPLNS LSFVFTGWYD GSSFISSDVT 180
  181 NGFKCILYAL VEISLGFQVY VMFKTSNLKI WGIMASLLSI GLGLIVVAFQ INLTILSHIR 240
  241 FSRAISTNRS EEESSSSLSS DSVGYVINSI WMDLPTILFS ISINIMTILL IGKLIIAIRT 300
  301 RRYLGLKQFD SFHILLIGFS QTLIIPSIIL VVHYFYLSQN KDSLLQQISL LLIILMLPLS 360
  361 SLWAQTANNT HNINSSPSLS FISRHHSSDS SRSGGSNTIV SNGGSNGGGG GGGNFPVSGI 420
  421 DAQLPPDIEK ILHEDNNYKL LNSNNESVND GDIIINDEGM ITKQITIKRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.73
Transmembrane Helix	45	68	0.88
Cytoplasmic	69	129	0.80
Transmembrane Helix	130	150	0.82
Non-Cytoplasmic	151	181	0.67
Transmembrane Helix	182	202	0.80
Cytoplasmic	203	209	0.85
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	273	0.92
Transmembrane Helix	274	297	0.88
Cytoplasmic	298	311	0.94
Transmembrane Helix	312	336	0.90
Non-Cytoplasmic	337	343	0.88
Transmembrane Helix	344	364	0.87
Cytoplasmic	365	470	0.90