YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6629
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDDLGGSK VASEPKKQYI KLLTFNTWGL KFISKHRKER LRAIADALAN PKCPDEDYDI  60
   61 VALQEIWCEE DWQYLDLVCR PRYPYRRVFK AGIVSGPGLA VLSKISIAET FLYRFPINGR 120
  121 PSAFFRGDFY VGKSIAVTMF QPHHPDILPI ALLNSHMHAP YGSGDASYST HRACQAWDFA 180
  181 KLVRMLKKAG YAVIQVGDLN SKPDSLPYKL FTVEGGLTDS WNVLNKDNVV PNDQIATLSL 240
  241 EDQISLAGVT CNSRLNTWRE SRPLWEACRL DYALIDASNI TPVSAQVKFV DKLPPPLSCS 300
  301 YSDHFAYSVD LVIRPKEERV GSADEMSNNE EKVSVYRELL AEISQYRRLT IPFQILWRKL 360
  361 HFIISLVIVV GMHIAVVFVA NVAAWVSVIF LFLTTLVVVT GGINGLIWYM GVRAESRALQ 420
  421 EVQMEVEDAY TYIRKKEV

Type	Start	End	Confidence
Cytoplasmic	1	356	0.93
Transmembrane Helix	357	380	0.85
Non-Cytoplasmic	381	387	0.62
Transmembrane Helix	388	409	0.94
Cytoplasmic	410	438	0.92