YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13699, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSSSFPI PTWDTPFGIQ LWPIFDKVIS QATNNKFIPS QFQFISGHLP LSTLPEALMA  60
   61 ITIYYIVIFG GDYIFKKFNI KPFVLNGLFQ IHNLFLTTLS FTLLILMCEQ IIPMIYHHGL 120
  121 FYTICDIKAW TQPLITLYYL NYITKFIEFI DTVFLVVKQK KLTFLHTYHH GATALLCYTQ 180
  181 LVGTTSISWV PISLNLAVHV LMYWYYFLAA RGIRVWWKEW VTRFQIIQFI IDLVFVYFGT 240
  241 YQKVVITHFS KVLPYCGDCA GTMIAAYSGC AILSSYLVLF IAFYIDVYRR KDSTKSKIVK 300
  301 SVKGGVAAQV NEYVHASGVQ IPSNTNSTAK TVRSRKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.57
Transmembrane Helix	51	75	0.75
Cytoplasmic	76	88	0.61
Transmembrane Helix	89	113	0.80
Non-Cytoplasmic	114	186	0.56
Transmembrane Helix	187	208	0.86
Cytoplasmic	209	220	0.85
Transmembrane Helix	221	241	0.86
Non-Cytoplasmic	242	262	0.86
Transmembrane Helix	263	285	0.93
Cytoplasmic	286	337	0.97