YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238881517
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAYKDIVPI GTSLIIGSTC FGLGIIYGNW PYDLNTLWIH DIPEAFDASL RHYQQWGNSP  60
   61 MYVHYTLHAV GLLGLIGHFI KLYKPDEDAK YFEYGSLGLF MVGVVIYLTN LRTGVNSCLV 120
  121 GQWGDVDYQT GINVMAASQV MIIFVLLGVL LLQGGLYYAQ WYDNKLKEEF YRQEAKEAAL 180
  181 AAESQAQQEH DIATKGKKDK AQPQGEVIEE VTGATTTTGA ASATKGQKKT TKKRKS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	28	0.92
Non-Cytoplasmic	29	61	0.95
Transmembrane Helix	62	82	0.92
Cytoplasmic	83	90	0.91
Transmembrane Helix	91	111	0.90
Non-Cytoplasmic	112	134	0.86
Transmembrane Helix	135	157	0.87
Cytoplasmic	158	236	0.98