YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1416, orf1...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLRIYTPI FRSTIVKPAV FRPYAFIVSR GIHTTGKLFQ MQHQQQPSVP DQSSIEKQRE  60
   61 WVDRLARERE ERQKYRNRTA TYYTASLGIF FLALAFSAVP IYRAICQRTG WGGIPITDST 120
  121 KFTPDKLIPV DTNKRIRIQF TCQSSGILPW KFTPLQREVY VVPGETALAF YRAKNMSKED 180
  181 IIGMATYSIS PDNVAGYFNK IQCFCFEEQR LSAGEEVDMP VFFFIDPDFA KDPAMRNIDD 240
  241 VVLHYSFFKA HYSDGELAAA PIGNMEMKAS VVS

Type	Start	End	Confidence
Cytoplasmic	1	78	0.85
Transmembrane Helix	79	102	0.84
Non-Cytoplasmic	103	273	0.88