YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6654
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSEVSYSK RLIQCTCAIF WCLLSGGPIF GFAALKPILI KEHVYEYLCD VHTPIFTSFN  60
   61 SNNDNNDIIA KCTEQDLKLN MMFTVAAMLT NVSALAIGRI LDVYGPKVCG LIGAFFLYLA 120
  121 CFVFIYSKYL AGSIIDPYLL GYSFLALGGP FAFISSFQLS NSFPKSSGTI LALITGAFDA 180
  181 SSAVFLLYRI GYNASLGSFT LEKFFTLYLS VPTFIAVVQI FIMNSDSYQT EGTSKLCVND 240
  241 EENHGHVASP VSSNDQETTP LLSEPATRTR RDSMGDAIKH PYEIEGEEFL VEHSSGVFGV 300
  301 MHGYSAQE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.70
Transmembrane Helix	12	35	0.79
Non-Cytoplasmic	36	80	0.63
Transmembrane Helix	81	101	0.76
Cytoplasmic	102	107	0.44
Transmembrane Helix	108	130	0.88
Non-Cytoplasmic	131	137	0.44
Transmembrane Helix	138	159	0.90
Cytoplasmic	160	167	0.45
Transmembrane Helix	168	191	0.88
Non-Cytoplasmic	192	203	0.47
Transmembrane Helix	204	223	0.91
Cytoplasmic	224	308	0.50