YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PFA5_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWSKEYLKK NYIKLLVPIC VVLVLAYLNY AINYAVGYKL VYVHHSHAVA IILWVLLGFF  60
   61 QLELLVYWVL IFLVGPGKSP VFPPIDLYGE NNKGLIPLPD LFFCDEKGFP YYCSNSNSIK 120
  121 LERSFFSKDV GYNVIKFDHY CIWIGQPIGQ DNYLFFMKFM MGFLAFFIIV LIYCARFTRE 180
  181 SIQQGEIDHN FIVLFVMSGF WIIMIGCLFG IHLRYVSINM TTLDEITINQ RKRYNRWKDA 240
  241 RKNPNMPSWM KTKHPPRKET GRRYVNVKHK TGRAIVRYYI DERPFDMGFR RNWINLVFNG 300
  301 NRNHGKDDEF YTLWRLAAAF VVFIIPFIDI PFSFRGKLQV KDDVEQELHE QENLLAKYTV 360
  361 YSSVVNDKFM NMIDEKLKKN SYSAPGYLVE TTPQNNQSTI DKDSI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.92
Non-Cytoplasmic	33	49	0.73
Transmembrane Helix	50	71	0.90
Cytoplasmic	72	153	0.82
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	190	0.72
Transmembrane Helix	191	213	0.92
Cytoplasmic	214	310	0.80
Transmembrane Helix	311	330	0.85
Non-Cytoplasmic	331	405	0.78