YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3658, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKRSNGGH SSRSNSRGRT KTTDSIVNNE IEEPFPQVRG KSKTTTKDQL KPCKSSDQAQ  60
   61 SRSRANSVFS FIFDKISVHQ PRKDGSKGFS LYKLLLLELN LNSNDTLTSE KSTDSMNDNH 120
  121 FEELQNMIKI PFCLEKFMIF GLLVCLNSFL SLFTLAPLKV LIISSQSAYQ FLTKQQTFQF 180
  181 CRFRLIKKDV ITLSIIILSI VVLSNRKLDI SRMYHDVRGQ TDIKLYVMFG VLECAEKLCS 240
  241 SIGQDILNVL YESSPNRNIY RFASFYLLST FYLSFHAYIL IYQTVSLNVA ANSYSNALMT 300
  301 LLLSNQFSEL KSSVFKKFER EGLFQITMAD LTERFQLSLM LGIIALKNLL QLSVTGGLIP 360
  361 NSWKSWNRWV GAVFGPSVVV IGSEIFVDWI KHCFIAKFNK IRPKVYKNFL YVSCLDFLEV 420
  421 FKTNTKSGKS SHEFTDYIVL TRRIGLPLLA SVVCFLRMIL ADLKHIFVFP VAGSNFYAII 480
  481 TSGSLIVLTF FTLLLIRVIL CMLIFKIANV LVTQHKQHQE KLRKKLNDSR SVAATRDYLS 540
  541 EGTPSPPDNR TNDTSIDIND SAVGTYLSSP LGLSFLPGSP NTEPSTINPT TRAQLYDADE 600
  601 KIPPTIEEKR NKQLLQGVLN EDSWCSDSGD EGLSQVMRYK MSSKRIW

Type	Start	End	Confidence
Cytoplasmic	1	136	0.93
Transmembrane Helix	137	158	0.89
Non-Cytoplasmic	159	184	0.85
Transmembrane Helix	185	205	0.77
Cytoplasmic	206	261	0.87
Transmembrane Helix	262	282	0.80
Non-Cytoplasmic	283	289	0.63
Transmembrane Helix	290	308	0.52
Cytoplasmic	309	334	0.67
Transmembrane Helix	335	359	0.64
Non-Cytoplasmic	360	368	0.77
Transmembrane Helix	369	390	0.82
Cytoplasmic	391	438	0.93
Transmembrane Helix	439	461	0.80
Non-Cytoplasmic	462	475	0.75
Transmembrane Helix	476	500	0.85
Cytoplasmic	501	647	0.95