YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3656, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKTRFFFT KNSLVLNTLQ QNKGCKLSIV SRTAPASKLF PSSFKISRIF NNLSKRKYST  60
   61 ISHRVDSTFT KTEFVKSTPP PVIPQKSIGY WLLGTSTLVF GIVVLGGLTR LTESGLSITE 120
  121 WKPVTGAVPP LNQQEWEEEF NKYKNSPEFK QLNSHITLNE FKFIFGMEWG HRLVGRCIGA 180
  181 FFILPALYFW ARGRFTPQLT KRVLGLTGLL GLQGFIGWWM VKSGLDEEQL AERKSKPTVS 240
  241 QYRLTTHLGA AFLMYLGVLW TAFEIFNENK LANLAKKSPE AVQAILKQLN NPALKKTKIV 300
  301 GLSLLALTFV TAMSGGMVAG LDAGLIYNTF PHMGDDWIPN GSELMSPVFS RKSDQSDLWW 360
  361 RNLLENPTTV QLVHRIFATT TFFAVLGAHI YVNRNKGVVP IAAKRIMHGV MGVVTLQVAL 420
  421 GITTLIYLVP IPLAALHQAG ALALLTASLA FSAKLKKPRP QFVQFINSNM KSKLLKTRV

Type	Start	End	Confidence
Cytoplasmic	1	87	0.98
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	171	0.95
Transmembrane Helix	172	191	0.95
Cytoplasmic	192	202	0.79
Transmembrane Helix	203	221	0.94
Non-Cytoplasmic	222	244	0.95
Transmembrane Helix	245	266	0.88
Cytoplasmic	267	301	0.94
Transmembrane Helix	302	324	0.90
Non-Cytoplasmic	325	371	0.96
Transmembrane Helix	372	392	0.94
Cytoplasmic	393	405	0.92
Transmembrane Helix	406	428	0.90
Non-Cytoplasmic	429	433	0.81
Transmembrane Helix	434	453	0.92
Cytoplasmic	454	479	0.95