YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3646, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLKRHEGH MHMSDSATSM VTSATSAVMD MASATMSMTM SSSTSSSSGM AMEGMDHGSS  60
   61 HMAMNMWLTA SFKDYPVVFK DLRASTKAQA FGIFVLLFFV AFLARMLEFV RNYLEEIVWK 120
  121 NNNYAEVEQG ISQHSANLQS PPVKSCCDDN AKEVVSDESI DKQNSPQHEE TTKARGTGKS 180
  181 LSLASTISRD IIRLALCIIP DLFAYSLMLA AMTYTLTYFF AVVIGSGVGR FVAERLMEHY 240
  241 RIKRGPPRNC C

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	40	0.82
Non-Cytoplasmic	41	87	0.76
Transmembrane Helix	88	107	0.90
Cytoplasmic	108	190	0.76
Transmembrane Helix	191	209	0.71
Non-Cytoplasmic	210	213	0.58
Transmembrane Helix	214	233	0.88
Cytoplasmic	234	251	0.89