YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6591
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSTEATLI NNLRHYIAQN YHHSSLSIWH KLPISRRSAV FILLFMGNLG ELRVLLTKRS  60
   61 SKLRNFPGHV ALPGGKADSG LESEWQVSRR EMHEEIGLSD NDEDLKNLGI SIEHLTQLPS 120
  121 YLSRTFSCVK PCVGFMHNLN GTDNDIASKL NIVLNPGESS SVFSCPLKDF LHPTIDIPAL 180
  181 EALERTSYKV KWGGIPWDLR SYTFLQNNIN EVEWLKNIKD LSASEEESEL DLKLGDELDS 240
  241 RDKASVTPPN VTPTRSLSPA AAATTITNKK RDRHKKKDLS TWGRLGSRRD EDTNEKIYDV 300
  301 WGLTANILHD LAEIVYVGKG KGEDKDKINQ QDNIGQEEMI YSLYEHGNLM KQKERNPEEV 360
  361 KLIHATHYDK DIGFDKILPE SEFNRLNSIY KL

Type	Start	End	Confidence
Cytoplasmic	1	37	0.50
Transmembrane Helix	38	56	0.54
Non-Cytoplasmic	57	392	0.95